| 1 |  MFK Karviná a.s. | 11 | 8 | 0 | 3 | 23:12 | +11 | 24 |
| 2 |  FC VYSOČINA JIHLAVA, a.s. | 11 | 6 | 2 | 3 | 19:12 | +7 | 20 |
| 3 |  FK DUKLA Praha a.s. | 11 | 6 | 2 | 3 | 21:18 | +3 | 20 |
| 4 |  FK VIAGEM Ústí nad Labem a.s | 11 | 5 | 4 | 2 | 19:13 | +6 | 19 |
| 5 |  FC Sellier & Bellot Vlašim, a.s. | 11 | 5 | 3 | 3 | 20:14 | +6 | 18 |
| 6 |  Fotbal Příbram a.s. | 11 | 4 | 5 | 2 | 20:18 | +2 | 17 |
| 7 |  FC Baník Ostrava, a.s. B | 11 | 4 | 2 | 5 | 19:16 | +3 | 14 |
| 8 |  FC SILON Táborsko a.s. | 11 | 3 | 5 | 3 | 15:15 | 0 | 14 |
| 9 |  FK VIKTORIA ŽIŽKOV a.s. | 11 | 4 | 2 | 5 | 12:19 | -7 | 14 |
| 10 |  SK Slavia Praha - fotbal a.s. B | 11 | 3 | 4 | 4 | 20:19 | +1 | 13 |
| 11 |  SK Kladno, z. s. | 11 | 3 | 4 | 4 | 16:17 | -1 | 13 |
| 12 |  Slezský fotbalový club Opava a.s. | 11 | 3 | 4 | 4 | 17:20 | -3 | 13 |
| 13 |  FK Arsenal Česká Lípa,z.s. | 11 | 3 | 3 | 5 | 14:20 | -6 | 12 |
| 14 |  1. SK Prostějov, fotbalový klub a.s. | 11 | 1 | 7 | 3 | 15:16 | -1 | 10 |
| 15 |  FK TŘINEC, a.s. | 11 | 2 | 4 | 5 | 13:20 | -7 | 10 |
| 16 |  SK Hanácká Slavia Kroměříž a.s. | 11 | 1 | 3 | 7 | 9:23 | -14 | 6 |
