| 1 |  FC ZBROJOVKA BRNO, a.s. | 30 | 24 | 4 | 2 | 62:22 | +40 | 76 |
| 2 |  FC SILON Táborsko a.s. | 30 | 16 | 5 | 9 | 49:33 | +16 | 53 |
| 3 |  SK Artis Brno - fotbal, a.s. | 30 | 15 | 7 | 8 | 50:37 | +13 | 52 |
| 4 |  FK VIAGEM Ústí nad Labem a.s | 30 | 15 | 3 | 12 | 53:46 | +7 | 48 |
| 5 |  FC Baník Ostrava, a.s. B | 30 | 14 | 5 | 11 | 45:38 | +7 | 47 |
| 6 |  Fotbal Příbram a.s.. | 30 | 13 | 7 | 10 | 29:30 | -1 | 46 |
| 7 |  Slezský fotbalový club Opava a.s. | 30 | 11 | 11 | 8 | 42:31 | +11 | 44 |
| 8 |  FK VIKTORIA ŽIŽKOV a.s. | 30 | 12 | 5 | 13 | 38:52 | -14 | 41 |
| 9 |  FC Sellier & Bellot Vlašim, a.s. | 30 | 10 | 8 | 12 | 41:34 | +7 | 38 |
| 10 |  SK Slavia Praha - fotbal a.s. B | 30 | 11 | 5 | 14 | 42:47 | -5 | 38 |
| 11 |  MFK Chrudim a.s. | 30 | 9 | 8 | 13 | 38:50 | -12 | 35 |
| 12 |  SK Hanácká Slavia Kroměříž a.s. | 30 | 10 | 4 | 16 | 32:43 | -11 | 34 |
| 13 |  SK Dynamo České Budějovice, a. s. | 30 | 10 | 4 | 16 | 31:43 | -12 | 34 |
| 14 |  1. SK Prostějov, fotbalový klub a.s. | 30 | 6 | 12 | 12 | 32:44 | -12 | 30 |
| 15 |  FC VYSOČINA JIHLAVA, a.s. | 30 | 7 | 8 | 15 | 32:39 | -7 | 29 |
| 16 |  AC Sparta Praha fotbal, a.s. B | 30 | 7 | 4 | 19 | 27:54 | -27 | 25 |
